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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13652106_13652799_F

Intron Information:

Intron Rank:
133421
Intron Class:
major
Intron Phase:
Intron Coordinates:
13652106 - 13652799
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CTGTGTTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
71.1
32.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
83.2
0.75
0.7
82.2
29.5
Minor 5ss
30.1
-2.3
3.3
39.5
45.9
Minor BPS
47.3
-0.2
2
56.95
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021767
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030595
13628016 - 13652898
24883