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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13658089_13658214_F

Intron Information:

Intron Rank:
133417
Intron Class:
major
Intron Phase:
Intron Coordinates:
13658089 - 13658214
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TCTTGTTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
84.7
0.78
0.8
78.9
33.2
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
46.5
-0.4
2.1
55.63
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021767
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045797
13651848 - 13658239
6392
ENSAPLT00000021245
13628016 - 13658239
30224