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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13658316_13664772_F

Intron Information:

Intron Rank:
127215
Intron Class:
major
Intron Phase:
Intron Coordinates:
13658316 - 13664772
Intron Length:
6457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTGGA
5'SS Class:
major
3'SS Sequence:
TTTCATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTGCTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.3
72.4
39.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
90.2
0.91
0.7
88.4
28.3
Minor 5ss
27.5
-2.6
2.9
32.7
42
Minor BPS
69.8
0.7
2
91.83
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018595
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035762
13658260 - 13669536
11277