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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13664837_13667826_F

Intron Information:

Intron Rank:
127216
Intron Class:
major
Intron Phase:
Intron Coordinates:
13664837 - 13667826
Intron Length:
2990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
CACCTTGCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCTTTCTCACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
67.3
0.39
0.9
61.4
34.6
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
59.7
0.38
1.9
79.4
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018595
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035762
13658260 - 13669536
11277