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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13693555_13695191_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13693555 - 13695191
Intron Length:
1637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TATTCTTTTATT
Flanking Amino Acid:
NMRCRIPEEKGITFDEFRSF
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1.1
85.2
32.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
78.6
0.64
0.9
79.3
33.7
Minor 5ss
44.2
-0.6
3.3
66.9
44.4
Minor BPS
70.3
0.72
1.5
84.68
36.4

Associated Gene:

Gene:
MICU3
Ensembl Gene ID:
ENSAPLG00000012995
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013561
13689254 - 13722413
33160