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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13695364_13695690_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13695364 - 13695690
Intron Length:
327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTATGCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTGCTTCATA
Flanking Amino Acid:
KAELNFEDFYRFMDNLQTEV
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
81.3
32.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.9
0.63
0.9
74.4
40.5
Minor 5ss
33.3
-1.9
3
43.8
43.9
Minor BPS
55.2
0.16
2.2
72.14
40.4

Associated Gene:

Gene:
MICU3
Ensembl Gene ID:
ENSAPLG00000012995
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013561
13689254 - 13722413
33160