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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13702710_13704020_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13702710 - 13704020
Intron Length:
1311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTATGTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTTGCTGTATG
Flanking Amino Acid:
KGDEEKRAMLRLQLYGYHTS
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
67.4
0.39
1.1
66
44.2
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
48
-0.3
2.3
64.01
44

Associated Gene:

Gene:
MICU3
Ensembl Gene ID:
ENSAPLG00000012995
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013561
13689254 - 13722413
33160