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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13707898_13712983_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
13707898 - 13712983
Intron Length:
5086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGACTGAA
5'SS Class:
weak_major
3'SS Sequence:
TGAGCAAATGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTAGAAT
U12 Branch Point Sequence:
TTTTTCTGAGCA
Flanking Amino Acid:
LNEKVICINLLHDCCNFLAE
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.6
0.2
1.2
59.3
35
Major BPS
62.9
0.32
1.5
72.3
40.4
Major PPT
48.3
-0
1.2
43.7
40.6
Minor 5ss
34.7
-1.7
3.3
45.3
44.3
Minor BPS
65.8
0.49
1.7
80.11
35.6

Associated Gene:

Gene:
MICU3
Ensembl Gene ID:
ENSAPLG00000012995
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013561
13689254 - 13722413
33160