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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13713003_13713038_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
13713003 - 13713038
Intron Length:
36

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
CTGAACCAAATAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTTTCCTGAACC
Flanking Amino Acid:
SKLFRNLNEKVICINLLHDC
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.1
31
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
50.6
0.02
1
44.5
36.4
Minor 5ss
30.9
-2.2
3.6
45.9
49.3
Minor BPS
85
1.08
1.2
91.78
26.9

Associated Gene:

Gene:
MICU3
Ensembl Gene ID:
ENSAPLG00000012995
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013561
13689254 - 13722413
33160