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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13818089_13818826_F

Intron Information:

Intron Rank:
132178
Intron Class:
major
Intron Phase:
Intron Coordinates:
13818089 - 13818826
Intron Length:
738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TAGGTCTTAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
79.2
0.66
0.8
72.8
32
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
58.5
0.34
1.8
72.13
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021026
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028486
13817918 - 13823405
5488