Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13822787_13834059_F

Intron Information:

Intron Rank:

132177

Intron Class:

major

Intron Phase:

Intron Coordinates:

13822787 - 13834059

Intron Length:

11273

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

CTATCTTGTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

ATGCCATGAAAC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.85

0.8

83.1

28.6

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

73.9

0.54

0.9

73.3

36.9

Minor 5ss

33.3

-1.9

3.4

45.9

43.7

Minor BPS

47.3

-0.2

1.8

58.45

39.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021026

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019154

13810311 - 13834143

23833