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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13858067_13878845_F

Intron Information:

Intron Rank:
132183
Intron Class:
major
Intron Phase:
Intron Coordinates:
13858067 - 13878845
Intron Length:
20779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TGACTTCTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTCCTGACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1.2
80.7
33.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.5
0.64
0.9
69.7
41.3
Minor 5ss
32.7
-2
3.2
43.9
43.8
Minor BPS
64.3
0.53
1.7
82.19
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021026
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030728
13818771 - 13879535
60765
ENSAPLT00000028599
13810311 - 13879535
69225