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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14024733_14026473_F

Intron Information:

Intron Rank:
146024
Intron Class:
major
Intron Phase:
Intron Coordinates:
14024733 - 14026473
Intron Length:
1741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TAACCCCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTCCATAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1.1
80
33
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
63.6
0.31
1
57.9
38
Minor 5ss
33.4
-1.9
2.4
38.7
39
Minor BPS
82
0.99
1.5
91.99
26.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028681
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033550
14024667 - 14026701
2035