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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14027880_14035765_F

Intron Information:

Intron Rank:
148276
Intron Class:
major
Intron Phase:
Intron Coordinates:
14027880 - 14035765
Intron Length:
7886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATGAT
U12 Branch Point Sequence:
ATATCTATGATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.6
41.7
Major BPS
72.3
0.55
1.1
63.4
42.8
Major PPT
100
1.12
0.4
100
0
Minor 5ss
37.9
-1.4
3
50.1
46.1
Minor BPS
54.7
0.13
1.5
65.31
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029839
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038549
14019582 - 14049367
29786