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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14035836_14049267_F

Intron Information:

Intron Rank:
148277
Intron Class:
major
Intron Phase:
Intron Coordinates:
14035836 - 14049267
Intron Length:
13432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTATGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTTTTCTGAAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
81.8
0.71
0.9
75.7
37.9
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
55.2
0.03
1.9
63.41
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029839
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038549
14019582 - 14049367
29786