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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14105991_14116261_R

Intron Information:

Intron Rank:
137882
Intron Class:
major
Intron Phase:
Intron Coordinates:
14105991 - 14116261
Intron Length:
10271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
TGAACTATAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
100
1.12
0.4
100
0
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
48.9
-0
1.7
60.57
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021680
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035703
14105754 - 14118186
12433