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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14118187_14132709_R

Intron Information:

Intron Rank:
137887
Intron Class:
major
Intron Phase:
Intron Coordinates:
14118187 - 14132709
Intron Length:
14523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCACC
5'SS Class:
major
3'SS Sequence:
CATGTACTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTCTTTCATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
72.6
37.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
64.1
0.32
1.1
58
42
Minor 5ss
42.4
-0.8
2.8
53.9
36.9
Minor BPS
66.7
0.38
1.8
74.65
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021680
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048062
14116352 - 14132811
16460