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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14172001_14202728_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14172001 - 14202728
Intron Length:
30728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTGTTTTAAAC
Flanking Amino Acid:
AHKNPQNGQVSYIHGSSQAQ
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.8
78.1
26.4
Major BPS
100
1.24
0.5
100
0
Major PPT
92.5
0.96
0.7
87.5
30
Minor 5ss
34.2
-1.8
2.8
36.8
41.9
Minor BPS
65.8
0.48
1.5
74.65
36.2

Associated Gene:

Gene:
TUSC3
Ensembl Gene ID:
ENSAPLG00000013401
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034597
14152112 - 14264573
112462
ENSAPLT00000013979
14146471 - 14264493
118023
ENSAPLT00000036396
14146570 - 14264573
118004