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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14202819_14209679_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14202819 - 14209679
Intron Length:
6861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGCAGA
5'SS Class:
major
3'SS Sequence:
TCTATTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAA
U12 Branch Point Sequence:
GTTTTTCTATTT
Flanking Amino Acid:
NKTGWAMAALCVVFAMTSGQ
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
63.3
42.6
Major BPS
61.4
0.28
1.1
67.9
34.4
Major PPT
83.7
0.76
0.8
77
37.1
Minor 5ss
45
-0.5
2.6
54.4
44.8
Minor BPS
49.5
0.05
1.9
72.55
39

Associated Gene:

Gene:
TUSC3
Ensembl Gene ID:
ENSAPLG00000013401
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036396
14146570 - 14264573
118004
ENSAPLT00000034597
14152112 - 14264573
112462
ENSAPLT00000013979
14146471 - 14264493
118023