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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14209821_14210484_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14209821 - 14210484
Intron Length:
664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTCTGATCT
Flanking Amino Acid:
KWIADRTDVHIRVFRPPNYS
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
83.8
34.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91.3
0.93
0.7
84.8
35.6
Minor 5ss
42.6
-0.8
3.1
63.9
40.4
Minor BPS
63
0.49
1.7
81.93
39.2

Associated Gene:

Gene:
TUSC3
Ensembl Gene ID:
ENSAPLG00000013401
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034597
14152112 - 14264573
112462
ENSAPLT00000013979
14146471 - 14264493
118023
ENSAPLT00000036396
14146570 - 14264573
118004