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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14210626_14213636_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14210626 - 14213636
Intron Length:
3011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTG
5'SS Class:
major
3'SS Sequence:
CCTTGTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTTTGCTATTT
Flanking Amino Acid:
YDEGADVFQQLNMNSAPTFM
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
66.2
44.9
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
81
0.7
0.8
76.3
32.3
Minor 5ss
34.4
-1.8
3.4
47.3
48.1
Minor BPS
46.2
-0.2
2.4
75.75
41.6

Associated Gene:

Gene:
TUSC3
Ensembl Gene ID:
ENSAPLG00000013401
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034597
14152112 - 14264573
112462
ENSAPLT00000013979
14146471 - 14264493
118023
ENSAPLT00000036396
14146570 - 14264573
118004