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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14213755_14221630_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14213755 - 14221630
Intron Length:
7876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATATAT
U12 Branch Point Sequence:
GCCACATGGATA
Flanking Amino Acid:
LQPQRQCSVCRQANEEYQVL
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79.8
35.1
Major BPS
53.7
0.09
1.3
53
42.8
Major PPT
86.1
0.81
0.7
85.5
29.2
Minor 5ss
36
-1.6
3
50.1
46.1
Minor BPS
42.7
-0.5
1.7
45.52
37.3

Associated Gene:

Gene:
TUSC3
Ensembl Gene ID:
ENSAPLG00000013401
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036396
14146570 - 14264573
118004
ENSAPLT00000034597
14152112 - 14264573
112462
ENSAPLT00000013979
14146471 - 14264493
118023