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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_1426357_1426621_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1426357 - 1426621
Intron Length:
265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGGCT
5'SS Class:
strong_major
3'SS Sequence:
TCACCCTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CCTTGTTTGACT
Flanking Amino Acid:
GRKYPPMDQESRAFLSSYYR
Intron Amino Acid Position:
835

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.9
36.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.5
0.53
0.8
64.9
36
Minor 5ss
31.2
-2.1
3.7
47.6
48
Minor BPS
59
0.36
1.8
74.14
43.6

Associated Gene:

Gene:
NDST4
Ensembl Gene ID:
ENSAPLG00000008309
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008669
1426237 - 1527439
101203