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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_1426725_1430932_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1426725 - 1430932
Intron Length:
4208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTCTG
5'SS Class:
major
3'SS Sequence:
TAATCCTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TAATCCTTTATA
Flanking Amino Acid:
SPHYNYSEALTFDPQKGFWC
Intron Amino Acid Position:
800

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.3
68.8
43.8
Major BPS
79
0.72
1
78.4
31.2
Major PPT
75.5
0.57
0.9
69.6
36.2
Minor 5ss
33.8
-1.8
3
40.5
38.8
Minor BPS
67.4
0.54
1.6
73.48
38.3

Associated Gene:

Gene:
NDST4
Ensembl Gene ID:
ENSAPLG00000008309
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008669
1426237 - 1527439
101203