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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_1431043_1433243_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1431043 - 1433243
Intron Length:
2201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTTTCTAAATA
Flanking Amino Acid:
RWLTHYPASQLLIIDGQQLR
Intron Amino Acid Position:
764

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
77.7
31.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
86.6
0.82
0.7
80.9
31.3
Minor 5ss
41.5
-0.9
2.7
54.2
42.9
Minor BPS
66.3
0.51
1.6
75.34
36.5

Associated Gene:

Gene:
NDST4
Ensembl Gene ID:
ENSAPLG00000008309
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008669
1426237 - 1527439
101203