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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14376844_14391907_F

Intron Information:

Intron Rank:
133334
Intron Class:
major
Intron Phase:
Intron Coordinates:
14376844 - 14391907
Intron Length:
15064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGACCATT
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CATTTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
77.8
38.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.3
0.79
0.7
78
30.8
Minor 5ss
45.4
-0.5
2.9
66
45.2
Minor BPS
58.5
0.34
1.6
71.82
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021698
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036271
14376361 - 14396315
19955