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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_1437972_1439718_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1437972 - 1439718
Intron Length:
1747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTCA
5'SS Class:
major
3'SS Sequence:
TTTTCACCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTTTTTCACC
Flanking Amino Acid:
FPEQTDPLWQNPCDDKRHRD
Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
85.5
0.8
0.7
82.7
27.9
Minor 5ss
37.1
-1.5
3.2
48.4
47.2
Minor BPS
63
0.39
1.7
72.92
38.9

Associated Gene:

Gene:
NDST4
Ensembl Gene ID:
ENSAPLG00000008309
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008669
1426237 - 1527439
101203