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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14391033_14391907_F

Intron Information:

Intron Rank:
133331
Intron Class:
major
Intron Phase:
Intron Coordinates:
14391033 - 14391907
Intron Length:
875

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTTGGAC
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CATTTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1
58.1
34.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.3
0.79
0.7
78
30.8
Minor 5ss
30.2
-2.3
3.5
40.2
46.2
Minor BPS
58.5
0.34
1.6
71.82
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021698
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020956
14390972 - 14396315
5344