Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14392094_14395400_F

Intron Information:

Intron Rank:

133332

Intron Class:

major

Intron Phase:

Intron Coordinates:

14392094 - 14395400

Intron Length:

3307

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAATCT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTGCATGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

ATTTATTCATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

77.5

31.3

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

82.8

0.74

0.9

35.5

Minor 5ss

39.9

-1.1

3.2

57.4

46.8

Minor BPS

48.5

-0

1.9

71.49

39.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021698

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020956

14390972 - 14396315

5344

ENSAPLT00000036271

14376361 - 14396315

19955