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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_1439902_1463389_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1439902 - 1463389
Intron Length:
23488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
TCTTCTCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTGAT
U12 Branch Point Sequence:
TGTCCTGTGACT
Flanking Amino Acid:
ELFLTILLNPISIFMTHLSN
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1.1
72.7
38.8
Major BPS
66.4
0.41
1.1
56.9
40.5
Major PPT
84
0.77
0.7
76.7
31.9
Minor 5ss
35.1
-1.7
3
45.5
42.9
Minor BPS
54.6
0.23
2.1
77.32
39.2

Associated Gene:

Gene:
NDST4
Ensembl Gene ID:
ENSAPLG00000008309
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008669
1426237 - 1527439
101203