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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_1465470_1475012_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1465470 - 1475012
Intron Length:
9543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TGCTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TGCTCCTAAATA
Flanking Amino Acid:
QMILNKEFALEHGIPTDMGY
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.7
29.8
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
82
0.72
0.9
76.2
37.8
Minor 5ss
36.9
-1.5
2.7
44
38.6
Minor BPS
65.2
0.47
1.7
71.68
41

Associated Gene:

Gene:
NDST4
Ensembl Gene ID:
ENSAPLG00000008309
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008669
1426237 - 1527439
101203