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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14672359_14713948_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14672359 - 14713948
Intron Length:
41590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGAGC
5'SS Class:
major
3'SS Sequence:
CTGTTCCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
CACACATTGATT
Flanking Amino Acid:
MQRLLLHFEQNF
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
61.3
40.2
Major BPS
76.2
0.65
1
67
39.8
Major PPT
79.7
0.67
0.8
77.7
31.1
Minor 5ss
30.6
-2.2
3.4
42.5
44.6
Minor BPS
49
0
1.7
61.61
42.5

Associated Gene:

Gene:
SGCZ
Ensembl Gene ID:
ENSAPLG00000013589
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014148
14672302 - 14843118
170817