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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14714051_14724867_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14714051 - 14724867
Intron Length:
10817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTGGG
5'SS Class:
major
3'SS Sequence:
TTATTGATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATAAAGT
Flanking Amino Acid:
KLPHSLSQHGDGMGNLRVTK
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
60.8
44.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
75.9
0.58
0.9
70.9
39.5
Minor 5ss
33.4
-1.9
3.2
36.7
41.6
Minor BPS
53.6
0.19
2.2
79.5
42.4

Associated Gene:

Gene:
SGCZ
Ensembl Gene ID:
ENSAPLG00000013589
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014148
14672302 - 14843118
170817