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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14724970_14769711_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14724970 - 14769711
Intron Length:
44742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ACATGTTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TTTTCTCTCATT
Flanking Amino Acid:
LYVKEINSRKDSPLVLQSDR
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
85.2
32.2
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
70.7
0.46
1
61.5
43.8
Minor 5ss
37.2
-1.4
3.6
57.3
47.4
Minor BPS
58.1
0.34
2
84.17
37.2

Associated Gene:

Gene:
SGCZ
Ensembl Gene ID:
ENSAPLG00000013589
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014148
14672302 - 14843118
170817