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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14769800_14789748_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14769800 - 14789748
Intron Length:
19949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
ATTATCTCAGAT
Flanking Amino Acid:
MGQLTGQLTVGADAVEAQCK
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
89.4
0.89
0.6
87.9
22.1
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
47.6
-0.1
1.9
68.87
41.5

Associated Gene:

Gene:
SGCZ
Ensembl Gene ID:
ENSAPLG00000013589
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014148
14672302 - 14843118
170817