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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14789872_14814780_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14789872 - 14814780
Intron Length:
24909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTAA
5'SS Class:
strong_major
3'SS Sequence:
TTATGTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTATTTATGT
Flanking Amino Acid:
VIGADRLKVTGTEGAVFGHS
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
73.6
33
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
76.9
0.61
0.9
74.9
39.6
Minor 5ss
42.1
-0.9
3.1
54.8
49.4
Minor BPS
55.1
0.24
2
80.49
41.6

Associated Gene:

Gene:
SGCZ
Ensembl Gene ID:
ENSAPLG00000013589
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014148
14672302 - 14843118
170817