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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_1480311_1508817_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1480311 - 1508817
Intron Length:
28507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTTTCTAAACG
Flanking Amino Acid:
GTRMNVNDVKALLETQNLLR
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
87.4
0.84
0.8
85.9
32.9
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
72
0.55
1.7
78.66
38.3

Associated Gene:

Gene:
NDST4
Ensembl Gene ID:
ENSAPLG00000008309
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008669
1426237 - 1527439
101203