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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14814854_14829704_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14814854 - 14829704
Intron Length:
14851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTGTT
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TTTTTCCTAATG
Flanking Amino Acid:
HIRAEPSQDLKLESPTRSLV
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
79
35.3
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
90.9
0.92
0.7
88.9
28.1
Minor 5ss
38.9
-1.2
3.7
57.4
41.7
Minor BPS
67.6
0.41
1.7
75.59
36.4

Associated Gene:

Gene:
SGCZ
Ensembl Gene ID:
ENSAPLG00000013589
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014148
14672302 - 14843118
170817