About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14842155_14842289_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14842155 - 14842289
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAACTTT
5'SS Class:
major
3'SS Sequence:
CTCTGCTTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAC
U12 Branch Point Sequence:
CTTTTGTTACTA
Flanking Amino Acid:
TIYELCACPNVLLGFPCDQF
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
73.9
37.5
Major BPS
71.4
0.53
1.2
63.4
44
Major PPT
77.5
0.62
0.8
71.3
33.2
Minor 5ss
49.3
-0
3
69.9
42.9
Minor BPS
48.6
-0.1
2.3
65.77
41.9

Associated Gene:

Gene:
SGCZ
Ensembl Gene ID:
ENSAPLG00000013589
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014148
14672302 - 14843118
170817