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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14890941_14892216_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14890941 - 14892216
Intron Length:
1276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCGCG
5'SS Class:
major
3'SS Sequence:
TATTTCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
GKDLTPITPSSGFCIEVMCA
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
60.7
42.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.2
0.79
0.8
80.2
31.4
Minor 5ss
35.3
-1.7
3.5
47.1
48.5
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
SLC20A2
Ensembl Gene ID:
ENSAPLG00000013621
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034498
14889670 - 14922152
32483
ENSAPLT00000034266
14889670 - 14922599
32930
ENSAPLT00000045431
14883324 - 14922152
38829