About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14891508_14892216_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14891508 - 14892216
Intron Length:
709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCGCG
5'SS Class:
major
3'SS Sequence:
ATGCTTCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GTTTTCTTATGC
Flanking Amino Acid:
GKDLTPITPSSGFTIELASA
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
60.7
42.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
72.3
0.5
0.9
66.3
35.1
Minor 5ss
35.3
-1.7
3.5
47.1
48.5
Minor BPS
57.5
0.21
1.9
70.41
41.2

Associated Gene:

Gene:
SLC20A2
Ensembl Gene ID:
ENSAPLG00000013621
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033376
14883324 - 14916463
33140
ENSAPLT00000029143
14883324 - 14922152
38829
ENSAPLT00000038790
14889926 - 14922152
32227