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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14892403_14903604_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14892403 - 14903604
Intron Length:
11202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTATAACT
Flanking Amino Acid:
GSFAHGGNDVSNAIGPLVAL
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
69.9
41.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82
0.72
0.9
73.6
41.8
Minor 5ss
29.8
-2.3
3.3
38.5
46.6
Minor BPS
69.7
0.7
1.5
86.83
32.2

Associated Gene:

Gene:
SLC20A2
Ensembl Gene ID:
ENSAPLG00000013621
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034266
14889670 - 14922599
32930
ENSAPLT00000033376
14883324 - 14916463
33140
ENSAPLT00000045431
14883324 - 14922152
38829
ENSAPLT00000029143
14883324 - 14922152
38829
ENSAPLT00000038790
14889926 - 14922152
32227
ENSAPLT00000034498
14889670 - 14922152
32483