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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14905837_14906497_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14905837 - 14906497
Intron Length:
661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
GTTGTTTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTGGGTTTAAAA
Flanking Amino Acid:
VCPWMKRKIESRLKKDAALS
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
75.3
0.57
0.8
73.8
36.8
Minor 5ss
37.8
-1.4
2.7
46.1
36
Minor BPS
49.8
-0
2
63.78
43

Associated Gene:

Gene:
SLC20A2
Ensembl Gene ID:
ENSAPLG00000013621
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033376
14883324 - 14916463
33140
ENSAPLT00000045431
14883324 - 14922152
38829
ENSAPLT00000029143
14883324 - 14922152
38829
ENSAPLT00000038790
14889926 - 14922152
32227
ENSAPLT00000014229
14897442 - 14916463
19022
ENSAPLT00000034498
14889670 - 14922152
32483
ENSAPLT00000034266
14889670 - 14922599
32930