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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14910393_14911632_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14910393 - 14911632
Intron Length:
1240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATTGCC
5'SS Class:
major
3'SS Sequence:
TTTTTCAACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCAACA
Flanking Amino Acid:
GVQWMQLVKIVASWFISPLL
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
67.8
35.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
78.7
0.65
0.9
74.2
34.3
Minor 5ss
34.2
-1.8
3.1
42
38.9
Minor BPS
72.9
0.71
1.4
83
31.4

Associated Gene:

Gene:
SLC20A2
Ensembl Gene ID:
ENSAPLG00000013621
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014229
14897442 - 14916463
19022
ENSAPLT00000034498
14889670 - 14922152
32483
ENSAPLT00000034266
14889670 - 14922599
32930
ENSAPLT00000033376
14883324 - 14916463
33140
ENSAPLT00000045431
14883324 - 14922152
38829
ENSAPLT00000029143
14883324 - 14922152
38829
ENSAPLT00000038790
14889926 - 14922152
32227