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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14911774_14915912_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14911774 - 14915912
Intron Length:
4139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCACTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
CCCTCCTTCACT
Flanking Amino Acid:
LMAGEVSAMVGSAVWQLIAS
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
77.8
0.63
0.8
69.5
36.4
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
64.7
0.54
1.8
75.03
47.8

Associated Gene:

Gene:
SLC20A2
Ensembl Gene ID:
ENSAPLG00000013621
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029143
14883324 - 14922152
38829
ENSAPLT00000038790
14889926 - 14922152
32227
ENSAPLT00000014229
14897442 - 14916463
19022
ENSAPLT00000034498
14889670 - 14922152
32483
ENSAPLT00000034266
14889670 - 14922599
32930
ENSAPLT00000033376
14883324 - 14916463
33140
ENSAPLT00000045431
14883324 - 14922152
38829