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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14952194_14952607_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14952194 - 14952607
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTGCG
5'SS Class:
major
3'SS Sequence:
TTATCCGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCTTTTATCC
Flanking Amino Acid:
SGSLAGSELCKIQYHFGEFG
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
65.2
39.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
79.3
0.66
0.9
73.4
36.8
Minor 5ss
40.8
-1
3
50
40.7
Minor BPS
63.8
0.41
1.5
75.07
35.5

Associated Gene:

Gene:
HGSNAT
Ensembl Gene ID:
ENSAPLG00000014020
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014609
14951579 - 14962004
10426