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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14952730_14953631_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
14952730 - 14953631
Intron Length:
902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTATGTAAC
5'SS Class:
weak_major
3'SS Sequence:
CTCTTTCATGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTCTCTTTCATG
Flanking Amino Acid:
INEGPVNSYLPILFAFLVYM
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.2
0.31
1.3
65.3
40.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
77.2
0.61
0.8
73.7
30.3
Minor 5ss
44
-0.7
2.5
58.4
39.6
Minor BPS
52.9
-0
1.8
57.98
44.9

Associated Gene:

Gene:
HGSNAT
Ensembl Gene ID:
ENSAPLG00000014020
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014609
14951579 - 14962004
10426