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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14955535_14955986_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14955535 - 14955986
Intron Length:
452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCATA
5'SS Class:
major
3'SS Sequence:
GTTGTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATGTATTTAATC
Flanking Amino Acid:
QRLRSLDTFRGLSLIIMVFV
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
74.1
38.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80
0.68
0.8
77.7
36.7
Minor 5ss
37.1
-1.5
3
40.3
45.6
Minor BPS
64.3
0.43
1.4
69.39
36.4

Associated Gene:

Gene:
HGSNAT
Ensembl Gene ID:
ENSAPLG00000014020
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014609
14951579 - 14962004
10426