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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14956064_14956670_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14956064 - 14956670
Intron Length:
607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAGTAC
5'SS Class:
major
3'SS Sequence:
TATTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCCTTCTTATTT
Flanking Amino Acid:
YWFFKHESWNGLTVADLVFP
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
65.1
35.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.7
0.8
0.7
81.6
29.9
Minor 5ss
36.5
-1.5
3.4
46
44.9
Minor BPS
62.6
0.48
1.6
74.56
43.3

Associated Gene:

Gene:
HGSNAT
Ensembl Gene ID:
ENSAPLG00000014020
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014609
14951579 - 14962004
10426