Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14956702_14957603_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14956702 - 14957603

Intron Length:

902

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAGGTCTT

5'SS Class:

major

3'SS Sequence:

CTCTCTTCTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGATTAT

U12 Branch Point Sequence:

CATTTCCCACCT

Flanking Amino Acid:

GLTVADLVFPWFVFIMGTSI

Intron Amino Acid Position:

338

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.5

0.69

74.5

41.9

Major BPS

60.8

0.27

1.2

51.8

43.6

Major PPT

80.1

0.68

0.7

73.1

31.8

Minor 5ss

38.9

-1.2

3.4

55.1

43.5

Minor BPS

45.2

-0.2

2.1

65.62

44.7

Associated Gene:

Gene:

HGSNAT

Ensembl Gene ID:

ENSAPLG00000014020

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014609

14951579 - 14962004

10426